YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76615950
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLCVHETK TDKKESVMGS IVVRLKVKGN CNHITQSQKN VDLSQLVLAN SQFSKAHRHC  60
   61 SSCDQHRHCH QGMTENQTWV TEFILLGFPL SPSMQMLLFG LFSLFYVLTL MGNGVILGLI 120
  121 SLDPRLHTPM YFFLSHLAIV DISYASNNVP KMLVNLLNKK NTISFVPCIM QTFLYMAFAH 180
  181 TECLILVVMS HDRYVAICHP LRYSVIMSWR VCTVQAVASW TCGSLLALVH VGLILRLPFC 240
  241 GPHEINHFFC EILSVLKLAC ADTKLNQVVI FAASVFILVG PLCLVLGSYA RILAAILRIQ 300
  301 SAEGRRKAFS TCSSHLCVVG LFFGSAIVMY MAPKSRHPEE QQKILSLFYS LFNPMLNPLI 360
  361 YSLRNKEVKG AFRRVLWKDR LIINTDLG

Type	Start	End	Confidence
Cytoplasmic	1	96	0.74
Transmembrane Helix	97	122	0.83
Non-Cytoplasmic	123	171	0.58
Transmembrane Helix	172	190	0.71
Cytoplasmic	191	210	0.74
Transmembrane Helix	211	234	0.85
Non-Cytoplasmic	235	268	0.87
Transmembrane Helix	269	293	0.87
Cytoplasmic	294	310	0.90
Transmembrane Helix	311	332	0.93
Non-Cytoplasmic	333	388	0.66