YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76615572
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKASVSRY SRRHRMRLRL LHDFSLRYPP SRGLGNGSGA QVRACALGTG RALAGVWAGR  60
   61 RRAMGLPALL LLALCAASAR GLYFHIGETE KRCFIEEIPD ETMVIGNYRT QMWDKQKEVF 120
  121 LPSTPGLGMH VEVKDPEGKV VLSRQYGSEG RFTFTSHTPG DHQICLHSNS TRMALFAGGR 180
  181 LRVHLDIQVG EHTNNYPEIA AKDKLTELQL RARQLLDQVE QIQKEQDYQR YREERFRLIS 240
  241 ESTNQRVLWW SIAQTVILIL TGIWQMRHLK SFFEAKKLV

Type	Start	End	Confidence
Signal Peptide	1	79	0.54
N-region	1	70
H-region	71	76
C-region	77	79
Cleavage Site	79	80
Non-Cytoplasmic	80	246	0.90
Transmembrane Helix	247	266	0.90
Cytoplasmic	267	279	0.80