YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76613824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVDDLQFE EFGDTTTSLA ANPDATTISI EDPGETPKHK PGPLRGLGRE EDDELLGNDD  60
   61 SDKTELLAGQ KKSSPFWTFE YYQTFFDVDT HQVFDRIKGS LLPIPGKNFV RLYVRSNPDL 120
  121 YGPFWICATL VFAIAISGNL SNFLIHLGEK TYHYVPEFRK VSIAATIIYA YAWLVPLALW 180
  181 GFLVWRNSKV MNIVSYSFLE IVCVYGYSLF IYIPTAILWI IPQKAVRWVL VMIALAISGS 240
  241 VLAMTFWPAV REDNRRIALA TIVTIVLLHM LLSVGCLAYF FDAPEMDHLL TSTAAPNQTV 300
  301 VAAKSS

Type	Start	End	Confidence
Cytoplasmic	1	120	0.96
Transmembrane Helix	121	145	0.84
Non-Cytoplasmic	146	162	0.90
Transmembrane Helix	163	184	0.93
Cytoplasmic	185	195	0.82
Transmembrane Helix	196	220	0.83
Non-Cytoplasmic	221	227	0.76
Transmembrane Helix	228	250	0.91
Cytoplasmic	251	257	0.90
Transmembrane Helix	258	281	0.93
Non-Cytoplasmic	282	306	0.95