YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76613395
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAESGELIG ACEFMKGEEQ SPRILQPSVD TPALHFSPLC PNHCLRLLLG PPAYYNRCAR  60
   61 SHPFFVLSFP PRTPRFRLLC LSCVPRSLCS TFGRPPSSVK GPHRPLPGSS VQRLEGILLQ 120
  121 GILSVAFILL LLDLGFRDTS NHTPCLSSLP LLEVSGAVGE SLASLFPFRS GLEISEPNLH 180
  181 LQFNGYPQLL PAPADRLYFA TLRNRPKSTV NTHYFSIDEE LVYEKKFCMT DLLFMLKLDK 240
  241 NQSTTKKKKI RTSPTFRWPK TLWLRRQPKY PRKSAPRRNK LDHYAIIKFP LTTESAMKKI 300
  301 EDNNTLVFIV DVKANKHQIK QAMKKLYDID VAKVNTLIRP DGEKKAYVRL APDYDALDVA 360
  361 NKIGII

Type	Start	End	Confidence
Cytoplasmic	1	115	0.57
Transmembrane Helix	116	136	0.66
Non-Cytoplasmic	137	366	0.85