YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76612475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	101	0.79
Non-Cytoplasmic	102	128	0.90
Transmembrane Helix	129	150	0.78
Cytoplasmic	151	158	0.64
Transmembrane Helix	159	178	0.79
Non-Cytoplasmic	179	187	0.52
Transmembrane Helix	188	207	0.47
Cytoplasmic	208	218	0.53
Transmembrane Helix	219	237	0.58
Non-Cytoplasmic	238	243	0.78
Transmembrane Helix	244	265	0.93
Cytoplasmic	266	309	0.85
Transmembrane Helix	310	335	0.79
Non-Cytoplasmic	336	351	0.76
Transmembrane Helix	352	374	0.83
Cytoplasmic	375	390	0.78
Transmembrane Helix	391	409	0.79
Non-Cytoplasmic	410	415	0.59
Transmembrane Helix	416	437	0.89
Cytoplasmic	438	447	0.62
Transmembrane Helix	448	471	0.88
Non-Cytoplasmic	472	482	0.63
Transmembrane Helix	483	502	0.91
Cytoplasmic	503	588	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFKAFNTFK EKILKPGKEG VKNAVGDSLG ILQRKIDGTN EEEVNIELNE EGRPVQTPRQ  60
   61 KPPLCDCHCC GVPKRYIIAI MSGLGFCISF GIRCNLGVAI VEMVNNSTVY VDGKPEIQTA 120
  121 QFNWDPETVG LIHGSFFWGY IVTQIPGGFI SNKFAANRVF GAAIFFTSTL NMFIPSAARA 180
  181 HYGCVMCVRI LQGLVEGVTY PACHGMWSKW APPLERSRLA TTSFCGECIG IIAKFHGQRS 240
  241 MVGYSSWAFC FSIAGILGII WYMFWLLQAY ECPAAHPTIS QEERTYIETS IGEGANLVSL 300
  301 SKFNTPWKRF FTSLPVYAII VANFCRSWTF YLLLISQPAY FEEVFGFAIS KVGLLSAVPH 360
  361 MVMTIIVPIG GQLADYLRSR KILTTTAVRK IMNCGGFGME ATLLLVVGFS HTKGMAISFL 420
  421 VLAVGFSGFA ISGFNVNHLD IAPRYASILM GISNGVGTLS GMVCPLIVGA MTKHKTREEW 480
  481 QNVFLIAALV HYSGVIFYGI FASGEKQEWA DPENLSEEKC GIIDQDELAE ETELNHESFA 540
  541 SPRKMSYGAT TQNCEVQRKE WRGQRGVTLN EEELTSYQNE GGNFSDAS