YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|155372217, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQPLLQTV LWAVLLSSPL RGGCGLRLAV YWNSSNPRLL RGDAVVELGF KDYLDIICPH  60
   61 YESPGPPEGP ETFALYVVDW AGYKACQAEG PSAFKRWECS RPFAPFGPVR FPEKIQRFTP 120
  121 FSLGMEFLPG ETYYYISVPT PGSPGQCLRL QVSICCKEDK PESAHPVGSH GESGTSGWQG 180
  181 GAAPTPLCLL LLLLFPILRL LRVL

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	179	0.98
Transmembrane Helix	180	201	0.75
Cytoplasmic	202	204	0.73