YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76611372
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAEATSGS PGTRGWEREV EIQPVTPDFN RSPEREELVL LERRGWATQS RFQQAGVRRT  60
   61 SRPEAASLAR GASGRRGGRK SKQQQGWAEA VSLSDAGQVG SSGSGDRVLG SAPGPFAASY 120
  121 TLPLPCGLLR TTRRFTRGSR DLIKPAGAGR SCRRRGGSSG SDSWKTPRRP RRGLGGSGLA 180
  181 AGRAAGAART ALVAGERSSL ESPAPDSREH VAGRAGPHES GREDASVGRQ ACSRWLVLAT 240
  241 ARSGTPAPTP TRGTYTTLWQ DGTSSIPPSS PGLALQPTEL APQSSHYCHS QKGPGSHGDP 300
  301 KKRAWRQLCV ASAFCLLFMI GEVIGGYLAH SLAIMTDAAH LLTDFASMLI SLFSLWVSSR 360
  361 PATKTMNFGW HRAEILGALL SVLSIWVVTG VLVYLAAERL ISGDYEIKEE TMLITSGCAV 420
  421 VVNIIMGLIL HQSGHGHSRN PEHSHNASQE QGSPSVRAAF IHVIGDFLQS LGVLVAAFIL 480
  481 YFKPEYKFID PICTFLFSIL VLGTTLTILR DVILVLMEGT PKGVDFTAVQ NLLLSVEGVE 540
  541 ALHSLHIWAL TVAQPILSVH IAIAENADAQ AVLKAVSDRL QEMFHFHTMT IQIEDYSEDM 600
  601 KDCQSCRGPS D

Type	Start	End	Confidence
Cytoplasmic	1	307	0.87
Transmembrane Helix	308	330	0.90
Non-Cytoplasmic	331	337	0.75
Transmembrane Helix	338	358	0.86
Cytoplasmic	359	374	0.76
Transmembrane Helix	375	397	0.91
Non-Cytoplasmic	398	411	0.78
Transmembrane Helix	412	431	0.91
Cytoplasmic	432	458	0.74
Transmembrane Helix	459	481	0.90
Non-Cytoplasmic	482	487	0.69
Transmembrane Helix	488	509	0.87
Cytoplasmic	510	611	0.77