YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76610493
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSYPDDLR RCALVAGCKI DGSNLSCVEA QGGPLRYGTR LSAPLAGPRR DCGENQPGSD  60
   61 LQCPYPQLQG PLSRLLPQHK APSPGPSEAM VWVKLGSSNF SSCPNGSSQW IWDVLGECAQ 120
  121 DAWDKASVGL GLLSILCFAA STFPQYIKAC KTGNMDQALS LWFLLGWIGG DSCNLIGSFL 180
  181 ADQLPLQTYT AVYYVLADLL MLSLYFYYKF KKRPSPWSAP INSLLLFILG VACATPLLRA 240
  241 AGSVAAPGEA FQGRTLLSVG PSNKPFTRKE IIGFVIGSVS SALYLFSRLP QIRTNFLRKS 300
  301 TQGISYSLFA LVMLGNTLYG LSVLLKNPEE GQSEGSYVLH HLPWLVGSLG VLLLDTIVSF 360
  361 RLYQIQS

Type	Start	End	Confidence
Cytoplasmic	1	158	0.67
Transmembrane Helix	159	181	0.87
Non-Cytoplasmic	182	188	0.86
Transmembrane Helix	189	208	0.95
Cytoplasmic	209	220	0.84
Transmembrane Helix	221	241	0.90
Non-Cytoplasmic	242	269	0.88
Transmembrane Helix	270	287	0.95
Cytoplasmic	288	302	0.85
Transmembrane Helix	303	323	0.92
Non-Cytoplasmic	324	340	0.86
Transmembrane Helix	341	363	0.87
Cytoplasmic	364	367	0.90