YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76609521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.51
Transmembrane Helix	44	67	0.77
Non-Cytoplasmic	68	103	0.46
Transmembrane Helix	104	127	0.89
Cytoplasmic	128	137	0.74
Transmembrane Helix	138	156	0.72
Non-Cytoplasmic	157	169	0.71
Transmembrane Helix	170	190	0.90
Cytoplasmic	191	210	0.93
Transmembrane Helix	211	234	0.89
Non-Cytoplasmic	235	248	0.85
Transmembrane Helix	249	268	0.92
Cytoplasmic	269	276	0.86
Transmembrane Helix	277	296	0.94
Non-Cytoplasmic	297	317	0.91
Transmembrane Helix	318	338	0.93
Cytoplasmic	339	344	0.86
Transmembrane Helix	345	367	0.89
Non-Cytoplasmic	368	383	0.87
Transmembrane Helix	384	405	0.90
Cytoplasmic	406	414	0.88
Transmembrane Helix	415	437	0.89
Non-Cytoplasmic	438	448	0.79
Transmembrane Helix	449	473	0.82
Cytoplasmic	474	480	0.93
Transmembrane Helix	481	503	0.92
Non-Cytoplasmic	504	522	0.92
Transmembrane Helix	523	544	0.94
Cytoplasmic	545	660	0.99
Transmembrane Helix	661	683	0.94
Non-Cytoplasmic	684	695	0.85
Transmembrane Helix	696	716	0.86
Cytoplasmic	717	869	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFSDIPAK NLTFAVNMTK TLSSPVTHGF NSTNDPPSMS ITRLFPALLE CFGIVLCGYI  60
   61 AGRANVITST QAKGLGNFVS RFALPALLFK NMVVLNFSNV DWSFLYSILI AKASVFFVVC 120
  121 ILTLLVASPD SRFSKAKIFP IFATQSNDFA LGYPIVEALY QTTYPEYLQY IYLVAPISLM 180
  181 MLNPIGFIFC EIQKWKDTQN ASQNKVKILG LGLLRVLQNP IVFMVFIGIA FNFILDQKVP 240
  241 EYMENFLDGL ANSFSGSALF YLGLTMVGKI KKLKKSAFVV LILLITAKLL VLPLLCREMV 300
  301 ELLDKDDSVV NHTSLSNYAF LYGVFPVAPG VAIFATQFNM EVEIITSGMV ISTFVSAPIM 360
  361 YVSAWLLTFP TMDPKPLAYA IQNVSFDISI ISLVSLIWSL AILLLSKKYK QLPHMLTTNL 420
  421 LIAQSIVCAG MMIWNFVKEK NFVGQILVFV LLYSSLYSTY LWTGLLAISL FLLKKRERVQ 480
  481 IPVGIIIISG WGIPALLVGV LLVTGKHNGE SIDSAFFYGK EQMIITAVTL FCSIVIAGIS 540
  541 LMCMNRTSQA GRYEGFDQSQ DRKAAEPGNT AFEDSPVPVN EPESFTSSVP ETSCCSCSMG 600
  601 NGELCCPSTE PVADITTSGS VTPSFEKNEH CVSRCNSQSC ILAQEEEQYL HSGDQQLTRH 660
  661 VLLCLLLIIG LFANLSSCLW WLFNQEPGRL YVELQFFCAV FNFGQGFISF GIFGLDKHLI 720
  721 ILPFKRRLEF LWNSKETAEN KDSSVPEEIK MTCQQFIHYH RDLCIQNIVK ERRCGAKTSA 780
  781 GTFCGCDLVN WLIEVGLASD RGEAVIYGDR LVQGGVIQHI TNEYEFRDEY LFYRFLQKSP 840
  841 KQSPPTINAD IPQQEKYKEI EHSSPSPKT