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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76609696
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYQLIPSK NSRRKNGWSA NGICVAVRYY DWLPCPGSKY RWSTFICNTH IIPVKNQEGV  60
   61 AMMFIINFEY VRNEENAASP ERVNPILPVK TVNRKLFGFK FPGLRVLTYR KQSLPQEDPD 120
  121 VVVIESSKHS DDSVAMKHLK SPTKESCSPS EADDTKALIQ PSKCSPLVNI SGPLDHSSPK 180
  181 RQWDRLYPDM LQSSSQLTHS RSKESICSIR RASSVHDIEG FSVHPKNIFR DRHASEDNGR 240
  241 NVKGPFNHIK SSLLGSTSDS NLNKYSTINK IPQLTLNFSD VKAEKKNASP PSSDKTIIAP 300
  301 KVKDRTHNVT EKVTQVLSLG ADVLPEYKLQ TPRINKFTIL HYSPFKAVWD WLILLLVIYT 360
  361 AIFTPYSAAF LLNDREEQKR RECGYSCSPL NVVDLIVDIM FIIDILINFR TTYVNQNEEV 420
  421 VSDPAKIAIH YFKGWFLIDM VAAIPFDLLI FGSGSDETTT LIGLLKTARL LRLVRVARKL 480
  481 DRYSEYGAAV LMLLMCIFAL IAHWLACIWY AIGNVERPYL TDKIGWLDSL GQQIGKRYND 540
  541 SDSSSGPSIK DKYVTALYFT FSSLTSVGFG NVSPNTNSEK IFSICVMLIG SLMYASIFGN 600
  601 VSAIIQRLYS GTARYHMQML RVKEFIRFHQ IPNPLRQRLE EYFQHAWTYT NGIDMNMVLK 660
  661 GFPECLQADI CLHLNQTLLQ NCKAFRGASK GCLRALAMKF KTTHAPPGDT LVHCGDVLTA 720
  721 LYFLSRGSIE ILKDDIVVAI LGKNDIFGEM VHLYAKPGKS NADVRALTYC DLHKIQREDL 780
  781 LEVLDMYPEF SDHFLTNLEL TFNLRHESAK ADLLLRSQSV NDSEADHCKL RRRLSFDSEE 840
  841 DKGSTTNDPE DSVDTIRHYQ SSKKHFEEKK SRSSSFISSI DDEQKPLFSG LADSPPGIGK 900
  901 ATGLDLEETV PTSGRIHIDK RSHSCKDITD TRSWERENAG TQADESSPSA LQRAAWGVSE 960
  961 TESDLTYGEV EQRLDLLQEQ LNRLESQMTA DIQTILQLLQ KQTTVVPPAY SMVTAGGEYQ1020
 1021 RPTIRLMRPR HPVASIKTDR TFSPSSQCPE FLDLEKSKLK SKESLSSGVH LNTASEDNLT1080
 1081 SLLKQDSDLS LELHPPRQRK TCLHPIRHPS LTDSSLSTVG VLGLHRHVSD PGLPGK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle