YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76609110
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVATEARGG AESAGSVFAL LQDGGRRGRC PWLRPAASAP PLPRSSPPPS RCGQSGRWGL  60
   61 REESGCPALD MAAAAAIAAS KGNGGGGGRA GAGEASSSRR KKGPGPLATA YLVIYNVVMT 120
  121 AGWLVIAVGL VRAYLAKGSY HSLYYSIEKP LKFFQTGALL EILHCAIGIV PSSVVLTSFQ 180
  181 VMSRVFLIWA VTHSVKEVQS EDSVLLFVIA WTITEIIRYS FYTFSLLNHL PYLIKWARYT 240
  241 LFIVLYPMGV SGELLTIYAA LPFVRQAGLY SISLPNKYNF SFDYYAFLIL IMISYIPLFP 300
  301 QLYFHMIHQR RKILSHTEEH KKFE

Type	Start	End	Confidence
Cytoplasmic	1	107	0.79
Transmembrane Helix	108	135	0.80
Non-Cytoplasmic	136	159	0.63
Transmembrane Helix	160	182	0.81
Cytoplasmic	183	238	0.60
Transmembrane Helix	239	261	0.88
Non-Cytoplasmic	262	283	0.80
Transmembrane Helix	284	304	0.94
Cytoplasmic	305	324	0.84