YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76608355
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPEMRSKY SLLFPEKEVE VEVEPGLRGP EIVTMGENDP PAAEAPFSFR SLFGLDDLKI  60
   61 SPVVPDADEV AAQILSLLPL KFFPIIVIGI IALILALAIG LGIHFDCSGK YKCRSSFKCI 120
  121 ELTARCDGVS DCRDGEDEYR CVRVSGQNAV LQVFTAATWR TVCAEDWKSH HATVACAQLG 180
  181 FPSYVSSDTL RVDSLEEQFR EDFVSINHLL PDDKVTALHH SVYTREGCTS GHVVTLKCSA 240
  241 CGLRTGSSPR IVGGNTSSLA QWPWQASLQF QGYHLCGGSV ITPLWVVTAA HCVYDLYLPK 300
  301 SWTIQVGLVS LLDSPAPSHL VEKIIYHSKY KPKRLGNDIA LMKLAGPVTF NEMTQPVCLP 360
  361 NSEENFPDGK LCWTSGWGAT EDGGDASPVL NHAAVPLISN KVCNHRDVYG GIISPSMLCA 420
  421 GYLKGGVDSC QGDSGGPLVC QERRVWKLVG ATSFGIGCAE VNKPGVYTRI TSFLDWIHEQ 480
  481 MEVGAAPKPP AAHVGAYHSS SSILSVGPQS CYLEPGGTAN PTSKALAGWA WWAGHTQGEC 540
  541 GWDMEDHVLL PTGETGGATE DQLWGWRPVR CKLEVPTGPR FLAGVRAAGE DGRKSWGLLC 600
  601 PTPSPCALPS ADAPPREWLQ IHLRTIPPAL SSGPGGGPGG RPPAPEDKAR KGEGQSRALS 660
  661 WGPDTAGLSH LPSEPPGKET WALPWPGRQV GLWGVRPLSP TPDHWEIPDS LPDPREEAAR 720
  721 PLTMEPHLTF LLACERVARP ELLPAPTPGV PLVSQNQPGG MLEDGRAQGG LLGLHPLQPG 780
  781 LQSGLRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle