YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254215795, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	231	0.86
Transmembrane Helix	232	250	0.73
Non-Cytoplasmic	251	258	0.77
Transmembrane Helix	259	282	0.85
Cytoplasmic	283	291	0.85
Transmembrane Helix	292	312	0.92
Non-Cytoplasmic	313	318	0.66
Transmembrane Helix	319	342	0.76
Cytoplasmic	343	360	0.81
Transmembrane Helix	361	384	0.87
Non-Cytoplasmic	385	392	0.89
Transmembrane Helix	393	414	0.88
Cytoplasmic	415	443	0.95
Transmembrane Helix	444	464	0.93
Non-Cytoplasmic	465	480	0.91
Transmembrane Helix	481	500	0.94
Cytoplasmic	501	510	0.81
Transmembrane Helix	511	530	0.97
Non-Cytoplasmic	531	537	0.79
Transmembrane Helix	538	560	0.90
Cytoplasmic	561	571	0.86
Transmembrane Helix	572	594	0.88
Non-Cytoplasmic	595	603	0.89
Transmembrane Helix	604	623	0.96
Cytoplasmic	624	634	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPFIQSSM GVNIAGNKKF SRISWDRTSN FRRRAMRIAL RGGPFSGSRD VRAMLVVAAQ  60
   61 SDCGQRAFRQ DARYTFAAGY CSCPSDPSDS RSPFRAAAFW PALRPALQPA SGRSATRRRC 120
  121 GHPHTRGPEF RRSAQRIAAC FVRFKKRPYK PEAYEGLDRS ARWHCCCKRM APHRAAFDKT 180
  181 PGDAMEPTFT ETGARASEPH ATTLAGRAAS SGDKLQRLKS IFSASAGNLI EWYDWYVYSA 240
  241 FALYFAHSFF PAGNQTAQLL NTAAVFAVGF LARPVGGWLM GIYADRYGRR PALLVSVVLM 300
  301 CVGSLIIALC PGYDVIGTAA PVLLVVARLL QGLSVGGEYG TSATYLSEVA TARDRGFYSS 360
  361 FQYVTLVAGQ LVALALLIVL QQFVLTTQQL ESWGWRIPFF IGAACALAAM RLRSSMEETG 420
  421 EFKRTLNARD KRGTLAELSK HPRAVLTVVG LTMGGTIAFY TYSIYMQKFL VNTVGMSKHD 480
  481 ATLVSAASLA LFAILQPIVG SISDRIGRRP VLIAFGVLGT LFTVPIMTAI SRTHDVWTAF 540
  541 FLNMAALVIV SGYTSINAVV KAELFPAKIR ALGVGFPYAL TVSIFGGTAE YLALWLKQAG 600
  601 HESLFYWYVT AAIFCSLLVY VCMRDTGKHS LIKD