YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76581538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.99
Transmembrane Helix	202	223	0.89
Non-Cytoplasmic	224	238	0.78
Transmembrane Helix	239	258	0.94
Cytoplasmic	259	267	0.89
Transmembrane Helix	268	289	0.81
Non-Cytoplasmic	290	307	0.65
Transmembrane Helix	308	327	0.90
Cytoplasmic	328	352	0.88
Transmembrane Helix	353	374	0.89
Non-Cytoplasmic	375	381	0.80
Transmembrane Helix	382	404	0.88
Cytoplasmic	405	413	0.73
Transmembrane Helix	414	433	0.92
Non-Cytoplasmic	434	468	0.87
Transmembrane Helix	469	488	0.93
Cytoplasmic	489	503	0.81
Transmembrane Helix	504	528	0.86
Non-Cytoplasmic	529	572	0.92
Transmembrane Helix	573	597	0.92
Cytoplasmic	598	616	0.94
Transmembrane Helix	617	637	0.93
Non-Cytoplasmic	638	643	0.77
Transmembrane Helix	644	667	0.88
Cytoplasmic	668	673	0.83
Transmembrane Helix	674	693	0.92
Non-Cytoplasmic	694	712	0.76
Transmembrane Helix	713	731	0.95
Cytoplasmic	732	763	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADRGPQHR NAATPQHRNA AAPQRRNAAA PQRRSTATPQ RRDTATPRHR DTATPRHRNT  60
   61 ATPQRSNTAA PAATITQQPR RSRRRRHGDF RHRNGRGLPR LSTARARAAP FQLHADGADD 120
  121 RDVLRLHPAR RARAAYARRA ALRGRDDQRR RRRGRRDHHR RDRPDGRLRA AREPLVRPGG 180
  181 RRALQPFVTE AAMLRRSTAR CARLMPAALF ACAALAPAAA RAMGAAAAPM PEKVVPNPVA 240
  241 IGMFFVFVFA TLALTRWAAR RTRSARDFYT AGGGITGLQN GLAIAGDYMS AASFLGLSGM 300
  301 VFMFGFDGLI YSIGFLVGWP FVMFLIAEPL RNLGKFTFVD VVAYRFAQRP IRLLTSASAL 360
  361 TIVVLYLVVQ MVGAGKLIQL LFGLSYGVAE LIVGVLMVVY VFFGGMTATT WVQVIKAVLL 420
  421 LAGATLLAAL ALGEFGFSLD EMFRRAVAVH PGALGIMGPG KLIRDPANAL SLGIALMFGT 480
  481 AGFPHILMRF FTVPNAKEAR KSVLYATGFI GYFYLLTFVI GFSAIVLLAQ HPEFFRHDAA 540
  541 GAFNLTRDLV GGSNMVAVKL AQAVGGNWFY GFIAAVTFAT ILAVVAGLTL AGATTISHDL 600
  601 YAQMWARGKP HERREMRISR AATLALSAVA IGLSILFEHV NVAFMVGLVA AVAASANFPV 660
  661 LATSIFWRGM TTRGAVAGGG LGLASAVALT VLSKSVWVDV LHHAHAPVFL DNPALVSVPL 720
  721 AFAGIVIGSL TDRSERARRE RDAFARQEFY AQTGALATRA ATH