YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76580390, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	61	0.96
Non-Cytoplasmic	62	68	0.78
Transmembrane Helix	69	88	0.92
Cytoplasmic	89	101	0.87
Transmembrane Helix	102	123	0.89
Non-Cytoplasmic	124	133	0.69
Transmembrane Helix	134	154	0.90
Cytoplasmic	155	164	0.75
Transmembrane Helix	165	186	0.88
Non-Cytoplasmic	187	200	0.72
Transmembrane Helix	201	221	0.89
Cytoplasmic	222	233	0.85
Transmembrane Helix	234	253	0.87
Non-Cytoplasmic	254	267	0.75
Transmembrane Helix	268	290	0.92
Cytoplasmic	291	316	0.81
Transmembrane Helix	317	342	0.74
Non-Cytoplasmic	343	382	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPIQSPAT TISGRHSPRR PPSSGRRLHR TRSRPEMARS RFVPDNFTLA LVGTVVLASF  60
   61 LPCRGEAAHA FNWATDIAVG LLFFLHGAKL SREAIVAGAT HWRLHALVLL STFALFPLLG 120
  121 LALKPVLTPL VTPALYAGVL FLCTLPSTVQ SSIAFTSIAK GNVPAAVCSA SASSLLGIFV 180
  181 TPALVGVMVS TQGTGATASP WSTIGAIVMQ LLVPFVAGQL LRPVIGRWIE RNRGVLRFVD 240
  241 QGSILLVVYV AFSEAVNEGL WHQIPPTALA GLAVVNVVLL AIALAVTTVV SKRLGFNRAD 300
  301 QITIIFCGSK KSLAAGVPMA KVIFAAHAVG AVVLPLMLFH QIQLMTCAAL AQRWGARDTS 360
  361 RERLADAPGA GALGSGASAA KR