YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76809832, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	178	0.69
Transmembrane Helix	179	200	0.55
Non-Cytoplasmic	201	208	0.78
Transmembrane Helix	209	231	0.86
Cytoplasmic	232	241	0.85
Transmembrane Helix	242	261	0.94
Non-Cytoplasmic	262	273	0.67
Transmembrane Helix	274	297	0.78
Cytoplasmic	298	310	0.84
Transmembrane Helix	311	334	0.87
Non-Cytoplasmic	335	341	0.84
Transmembrane Helix	342	363	0.91
Cytoplasmic	364	397	0.97
Transmembrane Helix	398	419	0.91
Non-Cytoplasmic	420	434	0.92
Transmembrane Helix	435	456	0.91
Cytoplasmic	457	466	0.83
Transmembrane Helix	467	486	0.96
Non-Cytoplasmic	487	492	0.81
Transmembrane Helix	493	516	0.87
Cytoplasmic	517	527	0.78
Transmembrane Helix	528	551	0.89
Non-Cytoplasmic	552	559	0.86
Transmembrane Helix	560	579	0.95
Cytoplasmic	580	628	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLSTVYAC HLFRSPDRSA ACRDWSPGIS LTRKRAFGQL FSFRRPRRAF NRPRTPRDAP  60
   61 VRRPSPCGGL FSRVQARDDP RSRADRFPLW IKRFMRPFTL ATDPRPIASG TPGKPWRTAP 120
  121 RRAVRPPSQE FSTLTATPAP SSSSSAPTEG ALPAAAHEIT VVDQGLLKRA VGAMALGNAM 180
  181 EWFDFGVYSY IAVTLGQVFF PSSSPSAQLL ATFGTFAAAF LVRPLGGMVF GPLGDRIGRQ 240
  241 RVLAMTMIMM AVGTFAIGLI PSYDSIGLLA PVLLLVARLV QGFSTGGEYG GAATFIAEFS 300
  301 TDKRRGFMGS FLEFGTLIGY VMGAGVVALL TASLSHDALL SWGWRVPFLI AGPLGLIGLY 360
  361 IRMRLEETPA FKRQAEAREA QDKAVPKAHF RRQLARHWRA LLLCVGLVLI FNVTDYMALS 420
  421 YLPSYLSSTL HFDEAHGLVL ILIVMVLMMP MTLATGRLSD AVGRKPVMLA GCVGLFALAI 480
  481 PALLLIRTGE TALVFGGLLI LGALLSCFTG VMPSALPALF PTEIRYGALA IGFNVSVSLF 540
  541 GGTTPLAAAW LVDATGNLMM PAYYLMGAAV IGAISVLALP ESARQPLKGS PPAVASHREA 600
  601 HALAREIKRR EAAERDDSGY PSAAALRA