YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76809430, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGYSPIDRR RAPFRTRRRA LAPRRGPLCA ARLLYSDNAT LRPFPDMELW SAPAVFPNDD  60
   61 YVASPTRHCH EPLPPMLTLR AARRPSPYRR RKHVRQDSAR RGRGARMRVR IVPAAADARA 120
  121 DARFPRRIRR ACAVLVTVPT FRIANGRPRV AAPHARRSSC RKRIIRALCL RFYFNTHIEI 180
  181 RSTKNIWSIR VGCVTLLNDP DPPIAVNCVC DAPGSACDPS RHRQRPTSVH SWELTKERTT 240
  241 MAHGLIMWLI IGAIAGWLAG LLVKGGGFGL LVDIIVGIVG AVIGGWLAGI LGIHIGGGFI 300
  301 SSVIVAVIGA VILLFVIRLF KRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	240	0.86
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	268	0.72
Transmembrane Helix	269	290	0.90
Non-Cytoplasmic	291	297	0.62
Transmembrane Helix	298	320	0.90
Cytoplasmic	321	323	0.89