YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76563128, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRPSEKEFK NSLFFKWILN NQAVIALMIT FLVFLTIFIF TKISFMFKPV FDFLAVLILP  60
   61 LVISGLLYYL LKPMVTFLEK RGIKRVTAIL SVFTIIILLL IWAMSSFIPM MSNQLRHFME 120
  121 DLPSYVNKVQ METSSFIDHN PWLKSYKGEI SSMLSNISSQ AVSYAEKFSK NVLDWAGNLA 180
  181 STVARVTVAT IMAPFILFYL LRDSRNMKNG FLMVLPTKLR QPTDRILREM NSQMSGYVQG 240
  241 QIIVAITVGV IFSIMYSIIG LRYGVTLGII AGVLNMVPYL GSFVAQIPVF TLALVAGPVM 300
  301 VVKVAIVFVI EQTLEGRFVS PLVLGNKLSI HPITIMFILL TSGAMFGVWG VFLSIPIYAS 360
  361 IKVVVKELFD WYKAVSGLYT VDVVTEERSE EVKNVE

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	40	0.91
Non-Cytoplasmic	41	49	0.80
Transmembrane Helix	50	71	0.92
Cytoplasmic	72	85	0.90
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	180	0.97
Transmembrane Helix	181	201	0.93
Cytoplasmic	202	236	0.95
Transmembrane Helix	237	259	0.86
Non-Cytoplasmic	260	262	0.64
Transmembrane Helix	263	283	0.70
Cytoplasmic	284	288	0.57
Transmembrane Helix	289	310	0.89
Non-Cytoplasmic	311	329	0.66
Transmembrane Helix	330	353	0.88
Cytoplasmic	354	396	0.71