YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74229930
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPITTSRVE FDEIPTVVGI FSAFGLVFTV SLFAWICCQR RSAKSNKTPP YKFVHVLKGV  60
   61 DIYPENLSSK KKFGGDDKSE AKRKAALPNL SLHLDLEKRD LNGNFPKTNP KAGSSSDLEN 120
  121 VTPKLFPETE KEAVSPESLK SSTSLTSEEK QEKLGTLFLS LEYNFEKKAF VVNIKEAQGL 180
  181 PAMDEQSMTS DPYIKMTILP KKKHKVKTRV LRKTLDPVFD ETFTFYGVPY PHIQELSLHF 240
  241 TVLSFDRFSR DDVIGEVLVP LSGIELSDGK MLMTREIIKR NAKKSSGRGE LLVSLCYQST 300
  301 TNTLTVVVLK ARHLPKSDVS GLSDPYVKVN LYHAKKRISK KKTHVKKCTP NAVFNELFVF 360
  361 DIPCESLEEI SVEFLVLDSE RGSRNEVIGR LVLGATAEGS GGGHWKEICD FPRRQIAKWH 420
  421 MLCDG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.62
Transmembrane Helix	16	37	0.92
Non-Cytoplasmic	38	425	0.69