YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75911547
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGTRWRVL GLCLLSVGIW GQDGNEEMGD TTQNPYKVSI SGTTVTLTCP RYDGHEIKWL  60
   61 VNSQNKEGHE DHLLLEDFSE MEQSGYYACL SKETPAEEAS HYLYLKARVC ENCVEVDVMA 120
  121 VATIVIVDIC ITLGLLLLVY YWSKNRKAKA KPVTRGVGAG GRQRGQNKER PPPVPNPDYE 180
  181 PIRKGQRDLY SGLNQRGI

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	119	0.99
Transmembrane Helix	120	142	0.62
Cytoplasmic	143	198	0.66