YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74315918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHCALKQR LFKEFLAEFL GTFVLVLFGC GSVAQTVLSR NTLGEPLTIH IGFSTGLMMG  60
   61 VYVSGGVSGG HLNPAVSLAM VILGKLKIWK FPVYVIAQML GAFAGAAAVF GLYYDAFMEF 120
  121 TSGILSVTGI NATGHIFSSY PGRHLTVLGG FVDQVVGTGM LVLCILAIVD GRNIGAPRGV 180
  181 EPLAVGVVLL GISVSMGLNC GYPLNPARDL GPRLFTALAG WGMEVFSTAD YWWWIPVAGP 240
  241 LVGGVVGAVI YFLLIELHHS NHNDTPQEEP EEEEDEDEEE DSSLKDKYEM INMS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	38	0.89
Non-Cytoplasmic	39	50	0.83
Transmembrane Helix	51	72	0.80
Cytoplasmic	73	90	0.70
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	146	0.60
Transmembrane Helix	147	169	0.88
Cytoplasmic	170	181	0.46
Transmembrane Helix	182	202	0.90
Non-Cytoplasmic	203	231	0.58
Transmembrane Helix	232	255	0.90
Cytoplasmic	256	294	0.90