YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74267686
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPVRR RALARLVLRL NAPLCVLSYV AGIAWFLALA FPPLTQRTYM SENAMGSTMV  60
   61 EEQFAGGDRA RSLARDFAAH RRKSGALPVA WLERTMRSVG LEVYTQSFSR KLPFPDETHE 120
  121 RYMVSGINVY GILRAPRAAS TESLVLTVPC GPDSTNSQAV GLMLALAAHF RGQIYWAKDI 180
  181 IFLVTEHDLL GTEAWLEAYH DVNITGMQSS PLQGRAGAIQ AAVALELSSD VVTSLDVAVE 240
  241 GLNGQLPNLD LLNLFQTFCQ KGGLLCTLQG KLQPQDWTSI DGPLQSVQTL LLMVLQQASG 300
  301 RPHGAHGLFL RYRVEALTLR GINSFRQYKY DLVAVGKALE GMFRKLNHLL ERLHQSFFFY 360
  361 LLPALSRFVS IGLYMPAAGF LLLVLGLKAL ELWMQLHEAG VGPEEAGENP PHPLTQGVGL 420
  421 ASLVAPLLVS QAMGLALYIL PVLGQHVATQ HFPVAEAEAV VLTLLAIYAA GLALPHNTHR 480
  481 VVSTQAPDRG WMALKLVALI YLALQLACIT LTNFSLGFLL AASMVPAAAI TKPSEPRALY 540
  541 AALLVLTSPA ATLLGSLFLW RELQEAPLSL TEGWQLFLAT LAQGVLEHHT YGALLFPLLA 600
  601 LGLYPCWLLF WNVLFWK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	363	0.95
Transmembrane Helix	364	387	0.85
Cytoplasmic	388	417	0.85
Transmembrane Helix	418	440	0.85
Non-Cytoplasmic	441	456	0.68
Transmembrane Helix	457	476	0.86
Cytoplasmic	477	496	0.72
Transmembrane Helix	497	522	0.87
Non-Cytoplasmic	523	537	0.65
Transmembrane Helix	538	560	0.93
Cytoplasmic	561	567	0.68
Transmembrane Helix	568	586	0.58
Non-Cytoplasmic	587	592	0.66
Transmembrane Helix	593	615	0.89
Cytoplasmic	616	617	0.77