YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|75490012, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNLIKVWM PVLLLISIAK GSNICTSRGV STCKECLSIH PTCAWCSQEV FQKGGSALSR  60
   61 CDLKDNIIQS GCSGKFIEFP VSSVKIVENI PLSDKAGGSG SDITQIQPQK IQLTLRPDDS 120
  121 RKFTVTVKQV ADYPVDLYYL MDMTNTMRKN LQTLYTLGNN LAGALRGVTS NLRMGFGAFV 180
  181 DKTVSPYMYT YPPEVITNPC YKTSEFCPPQ FGYRNVLSLT EQVERFTEEV KKQKVSRNRD 240
  241 SPEGGFDAIF QAVVCKDKIG WRSDASHLLV FTTDDISHSA LDARLSGIVQ PHDGECHIND 300
  301 QNEYDKTTIL DYPSVGTITD KISENNINLI FAVTSNVAPL YRNYSELIPG STVGTLTKDS 360
  361 SNVVQLILEL YAKIRSKVEL ELLNVPDELS LSVTATCLDD EVIPGVRSCD GLKIGDMVSF 420
  421 SIEAKLHGCP KQKSQTFTVK PIGFKDALQV TVDFACDCTC QQNSVPASPY CHEGNGTLEC 480
  481 GTCLCDPGRL GSRCECSESE YKPTQQDSCS PSPEARTCSG RGDCVCGQCA CRSSNFGKVW 540
  541 GPFCECDDFS CPRSKGQLCS GNGECFCGSC HCGSGWSGES CDCSTRTDTC MGSGGLMCSG 600
  601 RGHCVCGVCN CTQPGAYGST CDKCPTCPDA CTIKKECVEC KHYKRGGGLF EKNCNHVCRD 660
  661 EIVLVEELGF FETNAVNCSY KDEDDCVQNF QYYEDASGKS LLYLVKEPDC PKGADVLVVA 720
  721 LAVVGAILLL GLAALLIWKL LITIHDRREF AKFEEEKAKA KWEAANNPLY KGATTTFQNV 780
  781 AYRGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle