YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|130504431, gi...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETSAKLFS LWVYCVIIFL ADVGLGSNVC TSRGASTCQQ CLAVHPTCAW CFQEDFGQDV  60
   61 PGSSRCDLKR NLVEAGCNKG ALEYPTSKMH VKENEDLSDK ASGSTTDVTQ IQPQSIHISL 120
  121 RPDDSQVFKL KVRQVEDYPV DLYYLMDLSY SMNDDLSQLR RLGRGLAEEM SKTTSNLRMG 180
  181 FGAFVDKPVS PYMYISPEEA VLNPCYSIPY KCQPQFGYRH VLSLTEEVNR FTEEVKKQKV 240
  241 SRNRDAPEGG FDAIIQAAVC KDKIGWRPGA SHLLVFTTDA KTHVALDGRM AGIVRPNDGQ 300
  301 CYVGRDNIYN MSTTMDYPSL ALITEKMSEN NINLIFAVTS HVESLYKNYS ELIPGTAVGT 360
  361 LSEDSHNVIQ LIQDAYAKLR SKVELELLNV PEELSLTFNA TCLNGEVIPG LRSCSGLKRG 420
  421 DTVSFSVEAR ARGCPKEKRK TFTIKPVGFK DTLQITVNFE CECKCQAKAE PESPVCHHGN 480
  481 GTYECGICLC HPGRLGPRCE CAEGDYSPTE QDACSGPDKV ICSGRGDCVC GQCVCHNNDF 540
  541 GKVWGKRCEC DDFSCLRYKG ELCSGHGTCY CGFCQCDPDW KGENCNCSTR TDTCMSSLGL 600
  601 LCSGRGQCVC GSCECTQPGA YGSTCDKCPT CPDACTLKKE CVECKHFKRG KLFDDDSCTR 660
  661 ICRDEIRLVD DLVFHDKNAV NCTYKDEDDC VQRFQYYEDN SGKSILSLVK EPDCPKGPDI 720
  721 LVVLLSVAGA ILFLGLAALL IWKLLITIHD RREFAKFEEE RARAKWETGH NPLYKGATST 780
  781 FTNITYRGKD 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle