YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75908987, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPKEQTRFN RKHKLLLMGL AIAVLIVIAR QFNIQSLFQT LIFWVQSLGF FGPIAYIIIY  60
   61 NLATLLFIPG SILTLKSGCL FGVFWGSVYV LIAATTGAIL AFIIGRYLSR DWVVRQIDKY 120
  121 PKFKMIDQAV AKEGWKIVLL TRLSPVFPFN LLNYAFGITC ISLKDYILGS LGIIPGTIMY 180
  181 VYIGSLAGDL ALAGTNHQAV TPETQIWQWI MQGLGLIATV GVTVYITKIA QKALSQKVVT 240
  241 EEIIKSQDTN

Type	Start	End	Confidence
Cytoplasmic	1	14	0.92
Transmembrane Helix	15	34	0.93
Non-Cytoplasmic	35	49	0.76
Transmembrane Helix	50	73	0.79
Cytoplasmic	74	80	0.78
Transmembrane Helix	81	104	0.91
Non-Cytoplasmic	105	142	0.88
Transmembrane Helix	143	161	0.79
Cytoplasmic	162	165	0.61
Transmembrane Helix	166	193	0.74
Non-Cytoplasmic	194	205	0.86
Transmembrane Helix	206	227	0.91
Cytoplasmic	228	250	0.95