YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71558621, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTPRTVRPE VVTLLASAFL LLGFNINLWQ HLFAITSSDA KGLAMRFAFG LMIFCVFNIV  60
   61 LTLLAFRRVF KPVVIALFMI SAGVVYFMTE YGVMIDAGMF RNFAETNVTE VQGLLSFKLA 120
  121 LYIVLLGVLP SLILWKLPIS YRRWHLELFS KLVVGVVCCV AIGGVALANY QGLSSLFRNH 180
  181 HELRLMVVPS NYIGASLGYL SEQVISAQRP FAKIGEDAKR SADWATHARK SLTVLVVGES 240
  241 ARAENFGILG YGRDTTPNLN KESGLVAFTD VYSCGTETAV SVPCMFSNMG RKNYNATKAR 300
  301 NQEGLLDVLK RAGIEVVWRD NQAGCKGTCD RVTFQDVSNL KDPLLCNSHE CRDEILLQNL 360
  361 QGFIDSLDKD TVLVLHQMGS HGPEYFKRYP KEFEKFTPVC ESNALNNCSR DSIVNAYDNT 420
  421 LLYTDHVLAT LIDLLRSNQN KVDTAMVYLS DHGESLGEYN LFLHGTPYVL APDQQKHVPM 480
  481 LIWLSDTYQK SFAVSPECLA KQRNAPLSQD NLFHSMLGLL KVDTQVYNPS LDMFSECRTE 540
  541 LAAADKQ

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	33	0.90
Non-Cytoplasmic	34	42	0.91
Transmembrane Helix	43	66	0.88
Cytoplasmic	67	72	0.86
Transmembrane Helix	73	94	0.91
Non-Cytoplasmic	95	118	0.86
Transmembrane Helix	119	137	0.94
Cytoplasmic	138	147	0.89
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	547	0.98