YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71737534, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.47
Transmembrane Helix	6	30	0.83
Cytoplasmic	31	37	0.36
Transmembrane Helix	38	65	0.76
Non-Cytoplasmic	66	94	0.52
Transmembrane Helix	95	115	0.74
Cytoplasmic	116	139	0.83
Transmembrane Helix	140	160	0.92
Non-Cytoplasmic	161	170	0.87
Transmembrane Helix	171	193	0.93
Cytoplasmic	194	202	0.87
Transmembrane Helix	203	225	0.89
Non-Cytoplasmic	226	235	0.56
Transmembrane Helix	236	255	0.89
Cytoplasmic	256	277	0.83
Transmembrane Helix	278	297	0.88
Non-Cytoplasmic	298	352	0.87
Transmembrane Helix	353	377	0.79
Cytoplasmic	378	385	0.81
Transmembrane Helix	386	409	0.91
Non-Cytoplasmic	410	413	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNGLWLGFF VVATISALVQ WLVGGNAGIF AAMVESIFAM AKLSVEVMVL LFGTLTLWLG  60
   61 FLRIAEKAGI VDWLAKVLGP LFLRLMPEVP PGHPALGLIT LNFAANALGL DNAATPIGLK 120
  121 AMRSLQELNP SKTAASNAQI LFLVLNASSL TLLPVTIFMY RAQQGAPDPT LVFLPILLAT 180
  181 SVSTIVGLLS VAFMQRLRLW DPVVLAYLIP GALLLGTFMA FLGTLSAAAL AGLSSILGNL 240
  241 TLFGLIMMFL IIGTLRKVLV YEAFVEGAKE GFDVAKSLLP YLVAMLCAVG VLRASGALDF 300
  301 GLEGIRHVVQ WLGLDTRFVD ALPTAMVKPF SGSAARALLI ETMQTQGVDS FAALAAATIQ 360
  361 GSTETTFYVL AVYFGAVGIQ RARHAVGCAL LAEFSGVVAA IFVCYWFFGA TAT