YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71737234, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	243	0.84
Transmembrane Helix	244	270	0.82
Non-Cytoplasmic	271	285	0.66
Transmembrane Helix	286	308	0.79
Cytoplasmic	309	317	0.71
Transmembrane Helix	318	342	0.87
Non-Cytoplasmic	343	362	0.75
Transmembrane Helix	363	383	0.95
Cytoplasmic	384	400	0.72
Transmembrane Helix	401	422	0.85
Non-Cytoplasmic	423	441	0.80
Transmembrane Helix	442	465	0.88
Cytoplasmic	466	475	0.88
Transmembrane Helix	476	497	0.78
Non-Cytoplasmic	498	502	0.71
Transmembrane Helix	503	523	0.88
Cytoplasmic	524	543	0.63
Transmembrane Helix	544	565	0.93
Non-Cytoplasmic	566	580	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAIVTACP NGKVSSVLSA RLLEAAALRQ GWETSVEIID PNKSDQQLSA QDIEAADLVL  60
   61 VVNTGPVDLS RFVGKRLFQD SPAHALQDVD GFLQRAEREA QVHATSEAVT PQAADSSGAQ 120
  121 PRIVAITACP TGVAHTFMAA EAIQQAAKRL NYDLQVETQG SVGARNPLSA KAIAEADVVL 180
  181 LAADIEVNTD RFAGKKIYRC GTGIALKQSE ATLKKALAEG QVESDEAAAQ SPARQEKAGV 240
  241 YKHLLTGVSF MLPMVVAGGL LIALSFVFGI TAFKEQGTLA AALMQIGGEA AFKLMVPLLA 300
  301 GYIAYSIADR PGLAPGMIGG LLASTLGAGF IGGIIAGFLA GYSAAAINRY ARLPASVEAL 360
  361 KPILIIPLLS SLFTGLVMIY VVGKPVAGML EALTHFLDSM GTTNAILLGV VLGAMMCVDL 420
  421 GGPINKASYA FSVGLLASQS YAPMATAMAA GMVPPIGMGI ATILARRKFA QSEREAGKAA 480
  481 FVLGLCFISE GAIPFAAKDP LRVIPASVVG GALTGALSMY FGCKLMAPHG GLFVMLIPNA 540
  541 INHALLYLLA IIAGSVLTGV VYALIKRPEP VDMEVAPAGA