YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71557643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAATENTS APSSQQTPKP GKRKFLLIGL AVIVVILGLA IWAWYEFYGQ WSEETDDAYV  60
   61 NGNVVEITLL VTGTVISIGA DDGDLVHEGQ VLLKFDPSDA EVSLQSAEAN LGKVVRQVRG 120
  121 LYSNVDGMKA QLAAQRTAVQ TAQENYNRRR SLAAGGAISQ EELSHSRDSL TSAQSELNNI 180
  181 QQQLSTSVAL VDDTVVSSHP DVKAAASQLR QAFLANARST LVAPVTGYVA KRSVQLGQRI 240
  241 QPGTATMAVI PLDQLWIDAN FKETQLGKMR IGQPVEISSD LYGSDVKYSG TIDSLGAGTG 300
  301 SAFALLPAQN ATGNWIKIVQ RVPVRVHINP EELAKHPLRI GLSTTVEVNL HDQSGPVLAQ 360
  361 QPRKQAAFST QVYAAQLADA DALIARLIHE NSASSGKTAV QR

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	45	0.95
Non-Cytoplasmic	46	402	0.97