YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71556125, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVALLSVAG VALDALLGEP KRWHPLVAFG NFANRVEQRF NSGGRGWRSH GVTAWVITVV  60
   61 PLTLLATLLS WLPGIGWLVE VLALYCALGM RSLGEHVQPV AQALRSDDLV EARQRVGYLV 120
  121 SRQTSELDAT EVARAATESV LENGSDAVFA ALFWFVVAGA PGVVLYRLSN TLDAMWGYRN 180
  181 ERFERFGWAA AKVDDLLNYL PARLVALTYA LLGKTRLALR CWRTQAPAWD SPNAGPVMAA 240
  241 GAGALGVELG GAAIYHGELH QRPQLGEGAP ADADSIDRGW QLVQRGVWLW LLVICVVAEF 300
  301 YA

Type	Start	End	Confidence
Cytoplasmic	1	50	0.88
Transmembrane Helix	51	75	0.82
Non-Cytoplasmic	76	146	0.72
Transmembrane Helix	147	169	0.87
Cytoplasmic	170	285	0.59
Transmembrane Helix	286	301	0.56
Non-Cytoplasmic	302	302	0.48