YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71555933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.82
Transmembrane Helix	110	133	0.89
Non-Cytoplasmic	134	141	0.84
Transmembrane Helix	142	164	0.92
Cytoplasmic	165	176	0.83
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	219	0.90
Transmembrane Helix	220	239	0.94
Cytoplasmic	240	250	0.86
Transmembrane Helix	251	274	0.87
Non-Cytoplasmic	275	293	0.87
Transmembrane Helix	294	313	0.94
Cytoplasmic	314	322	0.92
Transmembrane Helix	323	347	0.87
Non-Cytoplasmic	348	379	0.91
Transmembrane Helix	380	402	0.90
Cytoplasmic	403	411	0.82
Transmembrane Helix	412	433	0.88
Non-Cytoplasmic	434	440	0.68
Transmembrane Helix	441	460	0.91
Cytoplasmic	461	469	0.73
Transmembrane Helix	470	492	0.87
Non-Cytoplasmic	493	508	0.94
Transmembrane Helix	509	530	0.91
Cytoplasmic	531	538	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVWAPEKV RLTRSGSPGP LIAGISNCLG LSIRQQTVRR RLARPESVHF RSKLASLSAV  60
   61 FALPSRGAFR KVLPRLTPTG CVCPIHGLRP IPYFDSVWSL VMKVLKGQDI LALGFMTFAL 120
  121 FVGAGNIIFP PIVGLQAGPH VWMAALGFLV TAVGLPVVTV IALARVGGAM DALSSPIGKI 180
  181 AGGALAAVCY LAVGPLFATP RTATVSFEVG LAPLTGDTPV ALFLYSLAYF LVVFWVSLYP 240
  241 GRLLDTVGRF LAPLKIIALA VLGIAAFALP AGGIGEAEPA YAVAPFSQGF INGYLTMDTL 300
  301 GALVFGIVIV NAIRSRGVES PRLITRYAII AGLIAGVGLA LVYVSLFRLG SGSHAVAAGA 360
  361 SNGAAVLHAY VQHTFGSLGS GFLAVLISLA CLVTAVGLTC ACAEYFAKVL PLSYRTLVII 420
  421 LAVFSLLVSN LGLTKLIQFS IPVLTAIYPP CIVLVALSFC KGLWQSQGRV VAPVMLISLI 480
  481 FGLIDALKGA GFTDYLPGVL TSLPLSDQGL AWLVPSVITL AGAVAVDRLM GKRSEALA