YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71735103, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDSSCLARL MLYTLNRAFR QGVCLDLDAV EAFAKKRAAS HCGPINKNEI KDSSMRIVPH  60
   61 LLGVAITAAL ISTPVFAAEL TGTLKKIKES GTITLGHRDA SIPFSYIADA SGVPMGYSHD 120
  121 IQLKIVEAIK KDLDMPDLKV KYNLVTSQTR IPLVQNGTVD VECGSTTNNV ERQQQVDFSI 180
  181 GIFEVGTRLL SKKDSSYKDF DDLKGKNVVT TAGTTSERIL KAMNADKQMG MNVISAKDHG 240
  241 ESFQMLESGR AVAFMMDDAL LAGEMAKAKK PDDWAVTGTA QSYEIYGCMV RKGDAPFKKA 300
  301 VDDAIVATYK SGDINAIYSK WFMSPVPPKG LNLNFPMSDK LKELIQNPTD KAAEDKKA

Type	Start	End	Confidence
Cytoplasmic	1	56	0.61
Transmembrane Helix	57	78	0.59
Non-Cytoplasmic	79	358	0.96