YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71734826, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAVKVSV YTWEGVDKKG GKLSGEVSGH NLALVKAQLR KQGINFTKVR KKPVSIFGKG  60
   61 KKIKPLDIAF FSRQMATMMK AGVPLLQSFD IIAEGAENPN MRALVGSLKQ EVSAGNSFAT 120
  121 ALRQKPEYFD DLFCNLVDAG EQAGALESLL DRIASYKEKT EKLKAKIKKA MTYPIAVLIV 180
  181 AIIVSGILLI KVVPQFQSVF AGFGAELPAF TLMVIGLSDI VQKWWLAIVG LFFVGAFLFK 240
  241 RAYKQSEKFR DNIDRFLLKV PIIGPLIFKS SVARYARTLA TTFAAGVPLV EALDSVAGAT 300
  301 GNVVFRDAVN KVKQDVSTGM QLNFSMRSTG VFPSLAIQMT AIGEESGALD NMLDKVATYY 360
  361 EDEVDNMVDN LTSLMEPMIM AVLGVIVGGL VIAMYLPIFK LGNVV

Type	Start	End	Confidence
Cytoplasmic	1	170	0.98
Transmembrane Helix	171	193	0.91
Non-Cytoplasmic	194	219	0.91
Transmembrane Helix	220	240	0.89
Cytoplasmic	241	376	0.67
Transmembrane Helix	377	399	0.90
Non-Cytoplasmic	400	405	0.48