YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71734131, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESGPGALA IRIIKTTTQE WSIMTKGTNK LSRLFAALVM AGVASHSFAA DTIKIGIAGP  60
   61 KTGPVAEYGT MQFNGAKMAI EQINAKGGVD GKKLEAVEYD DACDPKQAVA VANKVVNDGV 120
  121 KYVVGHLCSS SAQPASDVYE DEGIIMVTPA ATSPEITARG YKLVFRTIGL DSAQGPAAGN 180
  181 YIADVAKPKI VAVIHDKQQY GEGIATAVKQ TLEKKGVKVA LFEGINAGDK DFSSLIAKLK 240
  241 QANVDFVYYG GYHPELGQIL RQSKEKGLNA KFMGPEGVGN ESISQIAGEA SEGMLVTLPK 300
  301 SFDQDPANQA LTEAFKAKKE DPSGPFVYPS YSAVQVIADG IAAAKSEDTA KVAAAIHAGT 360
  361 FKTPMGELSY DDKGDLKNFQ FVVYEWHFGK PKTEAAK

Type	Start	End	Confidence
Signal Peptide	1	49	0.78
N-region	1	40
H-region	41	46
C-region	47	49
Cleavage Site	49	50
Non-Cytoplasmic	50	397	0.99