YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71554649, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSIGWAWL HTLGSPKGFY RVSARLLPWL SVSAALLLGI GIIWGLAFAP PDYQQGNSFR  60
   61 IIYIHVPAAM LAQSCYVMLA LCGVVGLVWK IKLADVALQC AAPIGAWMTA LALATGAIWG 120
  121 KPTWGAWWVW DARLTSMLIL LFLYFGLIAL GNAISNRASA AKACALLAIV GVVNIPIIKY 180
  181 SVEWWNTLHQ GATFSLTEKP AMPAEMWLPL LFTALGFYCF FGVVLLLRMR LEVLRRESRT 240
  241 QWAKAEVLRS LGQTPEPSEG RS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	48	0.93
Non-Cytoplasmic	49	67	0.85
Transmembrane Helix	68	89	0.93
Cytoplasmic	90	96	0.86
Transmembrane Helix	97	119	0.89
Non-Cytoplasmic	120	131	0.81
Transmembrane Helix	132	154	0.85
Cytoplasmic	155	162	0.72
Transmembrane Helix	163	182	0.90
Non-Cytoplasmic	183	206	0.95
Transmembrane Helix	207	229	0.89
Cytoplasmic	230	262	0.98