YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPP3_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNYKYDKAI VAESKNGGSP ALNNNPRKGG SKRVLLICLD LFCLFMAGLP FIIIETSTIK  60
   61 PYHRGFYCND ESIKYPQKTG ETINDAVLTA VGIVIAILAI ITGEFYRIYY LKEKSRSTIQ 120
  121 NPYVAALYKQ VGCFLFGCAI SQSFTDIAKV SIGRLRPHFL NVCNPDFSQI NCSVGYIQNY 180
  181 RCRGEDSKVQ EARKSFFSGH ASFSMYTMLY LVLYLQARFT WRGARLLRPL LQFTLIMMAF 240
  241 YTGLSRVSDH KHHPSDVLAG FAQGALVACC IVFFVSDLFK TKTTLSLPPS AIRKDMLSPV 300
  301 DIDRSNHHNM V

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	54	0.94
Non-Cytoplasmic	55	85	0.95
Transmembrane Helix	86	109	0.88
Cytoplasmic	110	130	0.83
Transmembrane Helix	131	145	0.54
Non-Cytoplasmic	146	195	0.55
Transmembrane Helix	196	217	0.72
Cytoplasmic	218	225	0.62
Transmembrane Helix	226	245	0.88
Non-Cytoplasmic	246	256	0.64
Transmembrane Helix	257	279	0.87
Cytoplasmic	280	311	0.75