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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|134025508, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSGRSLLLW GVLLGAALSV ARPPSTLPDQ VAPKTKTDVE PYSARPGDRI TLQCRLREDV  60
   61 QSINWAKNEM QLSETNRTRI TGEEIQISNA GPEDNGVYTC VTNGPSGTYT VLFSVNVSDA 120
  121 LPSAEDDDDD DDNSSSEEKA SENSKPNRPF WSHPEKMEKK LHAVPAAKTV KFRCPANGTP 180
  181 QPNLRWLKNG KEFRQDQRIG GYKVRSQTWS LIMDSVVPSD KGNYTCIVEN KYGTLNHTYQ 240
  241 LDVVERSPHR PILQAGLPAN TSVIVGSTAE FFCKVYSDPQ PHIQWLRHIE INGSRVASDG 300
  301 FPYVEILKTA GVNTSDKDME VLHLRNVTFE DAGQYTCLAA NSIGISHHSA WLTVLEVEDD 360
  361 KPAPLASPLQ LEIIIYCTGA AFVSAMVITI IIFKMKHPSK KSDFNSQLAV HKLAKSIPLR 420
  421 RQVTVSGDSN SSMHSGVILV RPSRLSSSGT PMLSGVSEYE LPEDPRWEVA RDRLILGKPL 480
  481 GEGCFGQVVM AEAIGLDKEK PNKVTKVAVK MLKSDASEKD LSDLISEMEM MKMIGKHKNI 540
  541 INLLGACTQD GPLYVIVEYA SKGNLREYLR ARRPPGMEYC YNPTCAPDQL LSFKDLVSCA 600
  601 YQVARGMEYL ASKKCIHRDL AARNVLVTED NVMKIADFGL ARDIHHIDYY KKTTNGRLPV 660
  661 KWMAPEALFD RIYTHQSDVW SFGVLLWEIF TLGGSPYPGV PMEELFKLLK EGHRMDKPTT 720
  721 CTNELYMMMK DCWHAMPSQR PTFNQLVEDL DRILALSSNQ EYLDLSMPVN QYSPCFPDTR 780
  781 SSTCSSGEDS VFSHDPLPDE PCLPKYSNGG LKKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle