YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74011403
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKWISVLL LLQLSCYFSS GSCGKVLVWP TEYSHWINVK TILDELVQRG HEVTVLTSSV  60
   61 SILVDPNKLS AIKFEIYSAH LSRGDFEALF IKLLNILIYD MPKDSFWTYF SLMQEFFWEF 120
  121 YECAQKLCKD VVLNKKLMTK LQESKFDVIL ADAVGPCGEL LAELLKIPLV YSLRFSPGYA 180
  181 FEKHSGGLPL PPSYVPVILS ELTDQMTFME RVKNMLYVLY FDFWFQTINE KSWDQFYSEV 240
  241 LGRPTTLYEL MRKADIWLIR TYWDFEYPRP LLPHFDFVGG LHCKPAKSLP TEMEEFVQSS 300
  301 GENGIVVFSL GSMINNMPEE RANVIASALA QIPQKVLWRF DGKKPDNLGR NTRLYKWIPQ 360
  361 NDLLGHPKTK AFITHGGTNG IYEAIYHGIP MVGIPLFADQ ADNIVHMKAK GAAIRLDLST 420
  421 MSSADLLDAL RTVINDPSYK ENAMKLSGIH HDQPIKPLDR AVFWIEYVMR HQGAKHLRPA 480
  481 SHDLTWFQYH SLDVIGFLLA CVATAIFVTT QCCLFCCRKV AKTGKKIKKE

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	493	0.99
Transmembrane Helix	494	517	0.87
Cytoplasmic	518	530	0.91