YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74009185
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKREGPDV NTPSSELRVR VRRRPVCAQR LPLLGSAGAA RGPQPRASLR TSVASPRRAQ  60
   61 PGGRPDGAAP AQLAPAPTAG AALHQPGLRG DGRPEPWAPS EEARVRENRL HFPARRLRPA 120
  121 AGPSSRRSDR QAPAHPWVPA SAALLLCGPR SAPSPSSAPA GGPHPPGAVD MRLAGPLRIV 180
  181 ALIVAVGLTW IVVSILLGGP GSGFPRIQQL FISPDNSATP EPRARKYKCG LPQPCPEEHL 240
  241 AFRMVSGAAN VIGPKICLED RMLMSSVKDN VGRGLNIALV NGVSGELIEA RAFDMWAGDV 300
  301 NDLLKFIRPL HEGTLVFVAS YDDPATKMNE ETRKLFSDLG SKNVKDLAFR DSWVFVGAKG 360
  361 VQNKSPFEQH VKNSKHTNKY EGWPEALEMG GCIPRRTVAG

Type	Start	End	Confidence
Cytoplasmic	1	178	0.92
Transmembrane Helix	179	201	0.92
Non-Cytoplasmic	202	400	0.85