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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74007448
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQGRWGKEE SALEAKVERL ACTYSREVCP TPGLHCGVSR AGYPSSRVYG AAFCTAAGAA  60
   61 AVMGFLKLIE IENFKSYKGR QIIGPFQRFT AIIGPNGSGK SNLMDAISFV LGEKTSNLRV 120
  121 KTLRDLIHGA PVGKPAANRA FVSMVYSEEG AEDRTFARVI VGGSSEYKIN NKVVQLHEYS 180
  181 EELEKLGILI KARNFLVFQG AVESIAMKNP KERTALFEEI SRSGELAQEY DKRKKEMVKA 240
  241 EEDTQFNYHR KKNIAAERKE AKQEKEEADR YQRLKDEVVR AQVQLQLFKL YHNEVEIEKL 300
  301 NKELASKNKE IEKDKKRMDK VEDELKEKKK ELGKMMREQQ QIEKEIKEKD SELNQKRPQY 360
  361 IKAKENTSHK IKKLEAAKKS LQNAQKHYKK RKGDMDELEK EMLSVEKARQ EFEERMEEES 420
  421 QSQGRDLTLE ENQVKKYHRL KEEASKRAAT LAQELEKFNR DQKADQDRLD LEERKKVETE 480
  481 AKIKQKLREI EENQKRIEKL EEYITTSKQS LEEQKKLEGE LTEEVEMAKR RIDEINKELN 540
  541 QVMEQLGDAR IDRQESSRQQ RKAEIMESIK RLYPGSVYGR LIDLCQPTQK KYQIAVTKVL 600
  601 GKNMDAIIVD SEKTGRDCIQ YIKEQRGEPE TFLPLDYLEV KPTDEKLREL KGAKLVIDVI 660
  661 RYEPPHIKKA LQYACGNALV CDNVEDARRI AFGGHQRHKT VALDGTLFQK SGVISGGASD 720
  721 LKAKARRWDE KAVDKLKEKK ERLTEELKEQ MKAKRKEAEL RQVQSQAHGL QMRLKYSQSD 780
  781 LEQTKTRHLA LNLQEKSKLE SELANFGPRI NDIKRIIQSR EREMKDLKEK MNQVEDEVFE 840
  841 EFCREIGVRN IREFEEEKVK RQNEIAKKRL EFENQKTRLG IQLDFEKNQL KEDQDKVHMW 900
  901 EQTVKKDENE IEKLKKEEQR HMKIIDETMA QLQDLKNQHL AKKSEVNDKN HEMEEIRKKL 960
  961 GGANKEMTHL QKEVTAIETK LEQKRSDRHN LLQACKMQDI KLPLSKGTMD DISQEEGSSQ1020
 1021 GEDSVSGSQR TSSIYAREAL IEIDYGDLCE DLKDAQAEEE IKQEMNTLQQ KLNEQQSVLQ1080
 1081 RIAAPNMKAM EKLESVRDKF QETSDEFEAA RKRAKKAKQA FEQIKKERFD RFNACFESVA1140
 1141 TNIDEIYKAL SRNSSAQAFL GPENPEEPYL DGINYNCVAP GKRFRPMDNL SGGEKTVAAL1200
 1201 ALLFAIHSYK PAPFFVLDEI DAALDNTNIG KVANYIKEQS TCNFQAIVIS LKEEFYTKAE1260
 1261 SLIGVYPEQG DCVISKVLTF DLTKYPDANP NPNEQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle