YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57111901
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRGGGGHG QPRSSVLPRV SPGSLSAYRT RTHNICMVSD FFYPNMGGVE SHIYQLSQCL  60
   61 IERGHKVIIV THAYGNRKGI RYLTNGLKVY YLPLKVMYNQ STATTLFHSL PLLRYIFVRE 120
  121 RVTIIHSHSS FSAMAHDALF HAKTMGLQTV FTDHSLFGFA DVSSVLTNKL LTVSLCDTNH 180
  181 IICVSYTSKE NTVLRAALNP EIVSVIPNAV DPTDFTPDPF RRHDSIITIV VVSRLVYRKG 240
  241 TDLLSGIIPE LCQKYPDLNF IIGGEGPKRI ILEEVRERYQ LHDRVRLLGA LEHKDVRNVL 300
  301 VQGHIFLNTS LTEAFCMAIV EAASCGLQVV STRVGGIPEV LPENLIILCE PSVKSLCKGL 360
  361 EKAISQLKSG ALPAPENIHN IVKTFYTWRN VAERTEKVYD HVAGEAVLPM DKRLDRLVSH 420
  421 CGPVTGHIFA LLAVFNFLFL LFLRWMTPDS IIDVAIDATG PKGAWTHQYP YSKKRGENNE 480
  481 MSKAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	423	0.83
Transmembrane Helix	424	443	0.88
Cytoplasmic	444	485	0.75