YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74006851
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNASPLHP YWPRHLRLDN FVPNDCPTWH LLAGLFSVSG VLVVTTWLLS GRAAVIPLGT  60
   61 WRRLSLCWFA VCGFIHMVIE GWFSLYHEDL LGDQAFLSQL WKEYAKGDSR YILSDNFTIC 120
  121 METITACLWG PLSLWVVIAF LRQQPLRFIL QLVVSVGQIY GDVLYFLTEH RDGFQHGEVG 180
  181 HPLYFWFYFV FMNGLWLVLP GILVLDSVKQ LAHAQSVLDA KGTKAKSK

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.97
Transmembrane Helix	29	50	0.92
Cytoplasmic	51	63	0.83
Transmembrane Helix	64	86	0.86
Non-Cytoplasmic	87	118	0.96
Transmembrane Helix	119	139	0.93
Cytoplasmic	140	147	0.81
Transmembrane Helix	148	167	0.92
Non-Cytoplasmic	168	183	0.90
Transmembrane Helix	184	205	0.93
Cytoplasmic	206	228	0.93