YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74006830
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQSSSQGV LFLSPLLCRA SSRASRALCH PHTHSKDEQE PPTAEPGALE KLLARPNSIA  60
   61 VVSLGAPPPS RPLGHWHSVP GPSGPDRPVL LSPGGAPHGR CAKPGALRGP SRSLSQRSPQ 120
  121 NRLRAGRPVL SVPAAAARSQ RRPPSLPPSL GSPVRPAVRA RTPPSAARPP AAMTEQAISF 180
  181 AKDFLAGGIA AAISKTAVAP IERVKLLLQV QHASKQIAAD KQYKGIVDCI VRIPKEQGVL 240
  241 SFWRGNLANV IRYFPTQALN FAFKDKYKQI FLGGVDKHTQ FWRYFAGNLA SGGAAGATSL 300
  301 CFVYPLDFAR TRLAADVGKS GTEREFKGLG DCLVKITKSD GIRGLYQGFN VSVQGIIIYR 360
  361 AAYFGVYDTA KGMLPDPKNT HIVVSWMIAQ TVTAVAGVVS YPFDTVRRRM MMQSGRKGAD 420
  421 IMYKGTVDCW RKIFKDEGGK AFFKGAWSNV LRGMGGAFVL VLYDELKKVI

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	284	0.98
Transmembrane Helix	285	304	0.59
Cytoplasmic	305	344	0.59
Transmembrane Helix	345	363	0.55
Non-Cytoplasmic	364	381	0.88
Transmembrane Helix	382	403	0.78
Cytoplasmic	404	470	0.75