YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74005970
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.89
Transmembrane Helix	99	121	0.87
Non-Cytoplasmic	122	132	0.64
Transmembrane Helix	133	150	0.74
Cytoplasmic	151	182	0.85
Transmembrane Helix	183	205	0.92
Non-Cytoplasmic	206	213	0.86
Transmembrane Helix	214	242	0.82
Cytoplasmic	243	253	0.87
Transmembrane Helix	254	279	0.84
Non-Cytoplasmic	280	286	0.85
Transmembrane Helix	287	307	0.96
Cytoplasmic	308	316	0.93
Transmembrane Helix	317	338	0.91
Non-Cytoplasmic	339	346	0.85
Transmembrane Helix	347	367	0.82
Cytoplasmic	368	411	0.81
Transmembrane Helix	412	430	0.88
Non-Cytoplasmic	431	437	0.58
Transmembrane Helix	438	461	0.89
Cytoplasmic	462	479	0.71
Transmembrane Helix	480	503	0.86
Non-Cytoplasmic	504	514	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKPEPKDA HQLNGTGPAP SPCSSDGPGR EPLAGTSEFL GPDGAGVEVV VIESRANAKG  60
   61 VREEDALLEN GSQSNESDDV STDHGPAPPS PLKETSFSIG LQVLFPFLLA GFGTVAAGMV 120
  121 LDIVQHWEVF QKVTEVFILV PALLGLKGNL EMTLASRLST AANIGHMDTP KELWRMITGN 180
  181 MALIQVQATV VGFLASIAAV VFGWIPDGHF SIPHAFLLCA SSVATAFIAS LVLGMIMIGV 240
  241 IIGSRKIGIN PDNVATPIAA SLGDLITLAL LSGISWGLYL ERDDWQYIYP LVCAFFVALL 300
  301 PVWVVLARRS PATREVLYSG WEPVIIAMAI SSVGGLILDK TVSDPNFAGM AVFTPVINGV 360
  361 GGNLVAVQAS RISTFLHMNG MPGENSEQVP RRCPSPCTTF FSPDVNSRSA RVLFLLVVPG 420
  421 HLVFLYTISC MQGGHTTLTL IFIIFYMTAA LLQVLILLYI ADWMVHWMWG RGLDPDNFSI 480
  481 PYLTALGDLL GTGLLALSFH VLWLIGDRDT DVGD