YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74005860
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRAASGAA GAAGAAAAAA AAAADGTDCA RGRSPRPRRL IDLCALWDTG VSFPAAGWKR  60
   61 ASGIARRRLN EAETLSSVQE AQLEQLEAAR PRRPGSGERG PVLRMARQPP PPSVHAAILL 120
  121 CLLSLSGAIE IPMDLSQPPT ITKQSVKDHI VDPRDNILIE CEAKGNPAPS FHWTRNSRFF 180
  181 NIAKDPRVSM RRKSGTLVID FRSGGRPEEY EGEYQCFARN KFGTALSNRI RLQVSKSPLW 240
  241 PKENLDPVVV QEGAPLTLQC NPPPGLPSPV IFWMSSSMEP ITQDKRVSQG HNGDLYFSNV 300
  301 MLQDMQTDYS CNARFHFTHT IQQKNAFTLK VLTTRGVAER TPSFMYPQGT ASSQMVLRGT 360
  361 DLLLECIASG VPTPDIAWYK KGGDLPSDKA KFENFNKALR ITNVSEEDSG EYFCLASNKM 420
  421 GSIRHTISVR VKAAPYWLDE PKNLILAPGE DGRLVCRANG NPKPTVQWMV NGEPLQSAPP 480
  481 NPNREVAGDT IIFRDTQISS RAVYQCNTSN EHGYLLANAF VSVLDVPPRM LSPRNQLIRV 540
  541 ILYNRTRLDC PFFGSPIPTL RWFKNGQGSN LDGGNYHVYE NGSLEIKMIR KEDQGIYTCV 600
  601 ATNILGKAEN QVRLEVKDPT RIYRMPEDQV AKRGTTVQLE CRVKHDPSLK LTVSWLKDDE 660
  661 PLYIGNRMKK EDDSLTIFGV AERDQGSYTC VASTELDQDL AKAYLTVLGR PDRPRDLELT 720
  721 DLAERSVRLT WIPGDDNNSP ITDYVVQFEE DQFQPGVWHD HSKFPGSVNS AILQLSPYVN 780
  781 YQFRVIAINE VGSSHPSLPS ERYRTSGAPP ESNPADVKGE GTRKNNMEIT WTPMNATSAF 840
  841 GPNLRYIVKW RRRETRETWN NATVWGSRYV VGQTPVYVPY EIRVQAENDF GKGPEPDTVI 900
  901 GYSGEDYPRA APTDVKIRVL NSTAISLQWN RVYPDTVQGQ LREYRAYYWR ESSLLKNLWV 960
  961 SQKRQQASFP GDRPRGVVSR LFPYSNYKLE MVVVNGRGDG PRSETKEFTT PEGVPSAPRR1020
 1021 FRVRQPNLET INLEWDHPEH PNGILIGYTL KYVAFNGTKL GKQIVENFSP NQTKFTMQRA1080
 1081 DPVSRYRFTL SARTQVGSGE AVTEESPAPP NEATPTAAYT NNQADIATQG WFIGLMCAIA1140
 1141 LLVLILLIVC FIKRSRGGKY PVREKKDVPL GPEDPKEEDG SFDYSDEDNK PLQGSQTSLD1200
 1201 GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE ETEGNESSEA TSPVNAIYSL1260
 1261 A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle