YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74005457
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNMRTLNW FINFLQCLNV TQLLKYYGHG ANSPISPDLF TYLCPALLYQ IDSRLCIEHF  60
   61 DRLLVEDLNK DKNQVPEDKA NIGASAWICG IISITVISLL SLLGVILVPI INQGCFKFLL 120
  121 TFLVALAVGT MSGDALLHLL PHSQGGHDHS HQHAHGHGHS HGHESKKFLE EYDAVLKGLV 180
  181 ALGGIYLLFI IEHCIRMFKH YKQQRGKQKW FMKQNTEEST IGRKLSDHKL NNTPDADWLQ 240
  241 LKPLAGTDDS VVSEDRLNET ELTDLEGQQE SPPKNYICVE EEKIMDHSHS DGLHAIHEHD 300
  301 LHAAAHNHHD ESKTVLRKHN HQWHHKHSHH SHGPCHSGSD LKETGIANIA WMVIMGDGIH 360
  361 NFSDGLAIGA AFSAGLTGGI STSIAVFCHE LPHELGDFAV LLKAGMTVKQ AIVYNLLSAM 420
  421 MAYIGMLIGT AVGQYANNIT LWIFAITAGM FLYVALVDML PEMLHGDGDN EEHGFCPVGQ 480
  481 FILQNLGLLF GFAIMLVIAL YEDKIVFDLQ F

Type	Start	End	Confidence
Cytoplasmic	1	7	0.76
Transmembrane Helix	8	28	0.67
Non-Cytoplasmic	29	83	0.93
Transmembrane Helix	84	108	0.88
Cytoplasmic	109	117	0.73
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	177	0.87
Transmembrane Helix	178	195	0.91
Cytoplasmic	196	364	0.94
Transmembrane Helix	365	389	0.74
Non-Cytoplasmic	390	410	0.59
Transmembrane Helix	411	432	0.91
Cytoplasmic	433	438	0.53
Transmembrane Helix	439	460	0.90
Non-Cytoplasmic	461	480	0.59
Transmembrane Helix	481	501	0.93
Cytoplasmic	502	511	0.61