YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74004726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	779	0.98
Transmembrane Helix	780	801	0.91
Cytoplasmic	802	813	0.72
Transmembrane Helix	814	835	0.81
Non-Cytoplasmic	836	866	0.78
Transmembrane Helix	867	890	0.83
Cytoplasmic	891	896	0.61
Transmembrane Helix	897	915	0.71
Non-Cytoplasmic	916	994	0.92
Transmembrane Helix	995	1013	0.89
Cytoplasmic	1014	1028	0.87
Transmembrane Helix	1029	1050	0.92
Non-Cytoplasmic	1051	1080	0.95
Transmembrane Helix	1081	1100	0.96
Cytoplasmic	1101	1120	0.90
Transmembrane Helix	1121	1145	0.89
Non-Cytoplasmic	1146	1182	0.86
Transmembrane Helix	1183	1217	0.71
Cytoplasmic	1218	1252	0.51
Transmembrane Helix	1253	1270	0.68
Non-Cytoplasmic	1271	1274	0.49
Transmembrane Helix	1275	1293	0.81
Cytoplasmic	1294	1406	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGGSGGVA RGCGLLEQTP SERSASRPRA ENLPWALRGA GAAPRLFCGG IPSAPAPAGR  60
   61 RPTPAEQVPK CGHRSPRGRG EGAPRRGRGA RGALPSSRGK RVLYFGLRRE ASREEAEDGS 120
  121 TPLPGLGPFQ VPGLSVAAPR DCPATPLPSD GRREASEARG AGKRRVGGCG PDALLSLGHV 180
  181 AARRRPAELG GRAGRLAALQ AVFDSSSQVW AVTQGLGDLC PWPGDPRRSV QNLAGSPKVP 240
  241 DPNTKQSECR AGCRTLKTLQ RRVLIPEALQ DMEIKDQGAQ MEPLLPTRND EEAVVDRGGT 300
  301 RSILKTHFEK EDLEGHRTLF IGVHVPLGGR KSHRRHRHRG HKHRKRDRER DSGLEDGRES 360
  361 PSFDTPSQRV QFILGTEDDD EEHIPHDLFT ELDEICWRES EDAEWRETAR WLKFEEDVED 420
  421 GGERWSKPYV ATLSLHSLFE LRSCILNGTV LLDMHANTLE EIADMVLDQQ VSSGQLNEDV 480
  481 RHRVHEALMK QHHHQNQKKL TNRIPIVRSF ADIGKKQSEP NSMDKNGQVV SPQSAPACVE 540
  541 NKNDVSRENS TVDFSKGLGG QQKGHTSPCG MKQRHEKGPP HQQDREVDLH FMKKIPPGAE 600
  601 ASNILVGELE FLDRTVVAFV RLSPAVLLQG LAEVPIPTRF LFILLGPLGK GQQYHEIGRS 660
  661 IATLMTDEVF HDVAYKAKDR NDLVSGIDEF LDQVTVLPPG EWDPSIRIEP PKNVPSQEKR 720
  721 KIPAVPNGTA AHGEAEPHGG HSGPELQRTG RIFGGLILDI KRKAPYFWSD FRDAFSLQCL 780
  781 ASFLFLYCAC MSPVITFGGL LGEATEGRIS AIESLFGASM TGIAYSLFGG QPLTILGSTG 840
  841 PVLVFEKILF KFCKEYGLSY LSLRASIGLW TATLCIILVA TDASSLVCYI TRFTEEAFAS 900
  901 LICIIFIYEA LEKLFELSEA YPINMHNDLE LLTQYSCNCV EPHNPSNDTL KEWKESNISA 960
  961 SDIIWENLTV SECKSLHGEY VGRACGHDHP YVPDVLFWSV ILFFSTVTLS ATLKQFKTSR1020
 1021 YFPTKVRSIV SDFAVFLTIL CMVLIDYAIG IPSPKLQVPS VFKPTRDDRG WFVTPLGPNP1080
 1081 WWTVIAAIIP ALLCTILIFM DQQITAVIIN RKEHKLKKGC GYHLDLLMVA VMLGVCSIMG1140
 1141 LPWFVAATVL SITHVNSLKL ESECSAPGEQ PKFLGIREQR VTGLMIFILM GSSVFMTSIL1200
 1201 KFIPMPVLYG VFLYMGASSL KGIQFFDRIK LFWMPAKHQP DFIYLRHVPL RKVHLFTVIQ1260
 1261 MSCLGLLWII KVSRAAIVFP MMVLALVFVR KLMDFLFTKR ELSWLDDLMP ESKKKKLEDA1320
 1321 EKEEEQSMLA MEDEGTVQLP LEGHYRDDPS VINISDEMSK TALWRNLLMT ADNSKDKESS1380
 1381 FPSKSIESRK EKKADSGKGV DRETCL