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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74004366
Protein type: Globular with Signal Peptide
Type Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGERLPSS TASSTTPSSS LPSVASSVSK GGLSTGAASL SSTINPCGHL FRAAGDQPFN  60
   61 LSTVSSAFPM VSHPVFGLHS ASSGHSEFGG LGTLGTPTAL AAHPQLASFP EWWRTTDVHT 120
  121 RTGATFFPPL LGIPPLFAPP AQNHDSSSFH SRTSGKSNRN GPEKGVNGSI NGNSTSSVSG 180
  181 INTPVLSTTA SSSVGQTKSI SSGGGNRKCN QEQNKNQPLD ARADKIKDKK PRKKAMESSS 240
  241 NSDSDSGTSS DTSSEGISSS DSDDLEEDEE EEDQSIEESE DDDSDSESEA QHKSNNQVLL 300
  301 HGMSDPKADG QKATEKAQEK RIHQPLPLVS ESQTHSSFQS QQKQPQVLSQ QLPFIFQSSQ 360
  361 AKEESVNKHT SVIQSTGLVS NVKPLSLVNQ AKKETYMKLI VPSPDVLKAG NKNTSEESSP 420
  421 LTSEMRSKRE QYKQTFPAQL KKQESSKSLK KVIAALSNPK TTSSSPAHPK QTVENNHPNP 480
  481 FLTNALLGNH QPNGVIQSVI QEAPLALTTK TKMQSKINEN IATASSTPFS SPVNLSTSGR 540
  541 RTPGNQTTVI PSASPILHTQ GKEKVVSNNV NTVKTQHHPH PAKSLVEQFR GTDSDIPSSK 600
  601 DSEDSNEDEE EDDEEEDEED DEDDESDDSQ SESDSNSESD TEGSEEDDDD DKDQDESDSD 660
  661 TEGEKTSMKL NKTTSSVKSP SMSLTAHSTP RNLHIAKAPG SAPAALCSES QSPAFLGTPS 720
  721 STLTSSPHSG TSKRRRVTDE RELRIPLEYG WQRETRIRNF GGRLQGEVAY YAPCGKKLRQ 780
  781 YPEVIKYLSR NGIMDISRDN FSFSAKIRVG DFYEARDGPQ GMQWCLLKEE DVIPRIRAME 840
  841 GRRGRPPNPD RQRAREESRM RRRKGRPPNV GSAEFLDNTD AKLLRKLQAQ EIARQAAQIK 900
  901 LLRKLQKQEQ ARVAKEAKKQ QAIMAAEEKR KQKEQIKIMK QQEKIKRIQQ IRMEKELRAQ 960
  961 QILEAKKKKK EEAANAKLLE AEKRIKEKEM RRQQAVLLKH QERERRRQHM MLMKAMEARK1020
 1021 KAEEKERLKQ EKRDEKRLNK ERKLEQRRLE LEMAKELKKP NEDMCLADQK PLPELPRIPG1080
 1081 LVLSGSTFSD CLMVVQFLRN FGKVLGFDVN IDVPNLSVLQ EGLLNIGDSM GEVQDLLVRL1140
 1141 LSAAVCDPGL ITGYKAKTAL GEHLLNVGVN RDNVSEILQI FMEAHCGQTE LTESLKTKAF1200
 1201 QAHTPAQKAS VLAFLINELA CSKSVVSEID KNIDYMSNLR RDKWVVEGKL RKLRIIHAKK1260
 1261 TGKRDTSGGI DLGEEQHPLG TPTPGRKRRR KGGDSDFDDD DDDDSDDQAD EDDEDEEDKE1320
 1321 DKKGKKTDIC EDEDEGDQAA SVEELEKQIE KLSKQQSQYR RKLFDASHSL RSMMFGQDRY1380
 1381 RRRYWILPQC GGIFVEGMES GEGLEEIAKE REKLKKAECI QIKEEIFETS EDTLNCSNPD1440
 1441 HCEQKEDPKE KDNTNLFLQK PGSFSKLSKL LEVAKMPPES DVMAPKPNNS ANGCTLSYQN1500
 1501 SGKHSLGSIQ STATQSNMEK TDSNNLFSTS SGSPGKFYSP LPNDQLLKTL TEKNRQWFSL1560
 1561 LPRTPCDDTS LTHADVSSAS VVTPQSQPPS TSPSPGPAPL LGSSAQNPVG LNPFAVSPLQ1620
 1621 MKSGVSMMGL QFCGWPTGVL TSNIPFTSPL PGLGSGLGLS EGNGNSFLTP NVASSKSESP1680
 1681 VPQNEKVSST QPAPVEVAKP VDFPSPKPIP EEMQFGWWRI IDPEDLKALL KVLHLRGIRE1740
 1741 KALQKQIQKH LDYITQACIK NKDVAIIELN ENEENQVTRD IVENWSVEEQ AMEMDLSILQ1800
 1801 QVEDLERRVA SASLQVKGWM CPEPASERED LVYFEHKSFS KLCKEHDGEF TGEEESSAHA1860
 1861 LERKSDNPLD IAVTRLADLE RNIERRYLKS PLSTTIQIKL DNVGTVTVPA PAPSISGDGD1920
 1921 GIEEDIAPGL RVWRRALSEA RSAAQVALCI QQLQKSIAWE KSIMKVYCQI CRKGDNEELL1980
 1981 LLCDGCDKGC HTYCHRPKIT TIPDGDWFCP ACIAKASGQT LKIKKLQVKG KKTNESKKGK2040
 2041 KVTLTGDTED EDSASTNSSL KRGNKDLKKR KMEENTSVNL SKQESFTSVK KPKRDDSKDL2100
 2101 ALCSMILTEM ETHEDAWPFL LPVNLKLVPG YKKVIKKPMD FSTIREKLSS GQYPNLETFA2160
 2161 VDVRLVFDNC ETFNEDDSDI GRAGHSMRKY FEKKWTDIFK VS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle