YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74003737
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENPTFCFRG AAAPGAPQGR EDGLRPGPRQ APAVQTGSAP SGGGAGARMS GDRPPRLHRP  60
   61 LLAPRQREPG GAANMAERRR HKKRIQEVGE PSKEEKAVAK YLRFNCPTKS TNMMGHRVDY 120
  121 FIASKAVDCL LDSKWAKAKK GEEALFTTRE SVVDYCNRLL KKQFFHRALK VMKMKYDKDI 180
  181 KKEKEKGKAE SGKEEDKKSR KENLKDEKTK KEKEKKKDGE KEEPKKEETP GTPKKKETKK 240
  241 KFKLEPHDDQ VFLDGNEVFV WIYDPVHFKT FVMGLILVIA VIAATLFPLW PAEMRVGVYY 300
  301 LSVGAGCFVA SILLLAVARC ILFLIIWLIT GGRHHFWFLP NLTADVGFID SFRPLYTHEY 360
  361 KGPKADLKKD EKSETKKQQK SDSEEKSDSE KKEEEEGKVG PGNHGTEGSG GERHSDTDSD 420
  421 RREDDRSQHS SGNGNDFEMI TKEELEQQTD GDCEEEEEED NDGETTKSSH EKS

Type	Start	End	Confidence
Cytoplasmic	1	269	0.89
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	300	0.70
Transmembrane Helix	301	329	0.83
Cytoplasmic	330	473	0.87