YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74003411
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYACAKFVST PFLVRSTSQL LSRSLSAVVL KPPETLPDKS LSSLTAPHPL TSLIPSRSFQ  60
   61 TSTISRDIDT AAKFIGAGAA TVGVAGSGAG IGTVFGSLII GYARNPSLKQ QLFSYAILGF 120
  121 ALSEALGSLF STGRSSTFTI NCSGFDKYGV DPAVFQTIFN QKDFRPVINY SIPTQVNISF 180
  181 ILSAILEVDE QLQLLTSFLW LKLVWNNPFI SWDPEECGAI SKLTVTTENL WLPDIFIVES 240
  241 MDVDQTPEGL SAYVTSDGHI VYNKPMRVTS ICSLDIFYFP FDQQNCTLTF SSFLYTVENM 300
  301 LLGMAKEVWE IADTSRDIVR TEGEWELLGI TKATPKMSVG SSLFDQIMFY VAIRRRPNLY 360
  361 IINLLVPSSF LIAIDALSFY LPAESENRAP FKITLLLGYN VFLLMMNKLL PASGTPLISV 420
  421 YFALCLSLMV VSLLETIFIT YLLHLATTRP PAMPRWLHSL LLSWASPRTC CPTKLWKENM 480
  481 GPGLTPPHLP GPKDPGQLVG KELAPREAEL SGDSGLTSTQ LAGLWVQFSH MMDTFLFRLY 540
  541 LLFLASSIIV VIVLWNT

Type	Start	End	Confidence
Cytoplasmic	1	73	0.88
Transmembrane Helix	74	100	0.81
Non-Cytoplasmic	101	111	0.75
Transmembrane Helix	112	132	0.85
Cytoplasmic	133	358	0.85
Transmembrane Helix	359	381	0.89
Non-Cytoplasmic	382	388	0.74
Transmembrane Helix	389	410	0.68
Cytoplasmic	411	417	0.52
Transmembrane Helix	418	443	0.87
Non-Cytoplasmic	444	533	0.46
Transmembrane Helix	534	555	0.93
Cytoplasmic	556	557	0.39